Application-Based Bioconjugate Services

RNAi delivery, ADC therapeutics, imaging, biosensors, regenerative medicine, and targeted delivery — application-focused bioconjugates engineered with full analytics and documentation by Bio-Synthesis.

RNAi & Targeted Delivery
ADC, PDC & Protein–Drug
Imaging & Biosensors
45+ Years of Bioconjugation

Overview

Bio-Synthesis designs and produces application-based bioconjugates that link antibodies, peptides, proteins, oligonucleotides, and polymers to functional payloads and targeting ligands. The same bioconjugation platform underpins RNAi delivery, ADC therapeutics, imaging agents, biosensors, regenerative scaffolds, and protein/nucleic-acid tools.

We provide end-to-end support from concept to data — starting from the target biology and application (e.g., gene silencing, tumor cell killing, in vivo imaging, or assay development) and working backward to the right carrier, linker, payload, and QC strategy. Each conjugate is engineered for reproducibility, fitness-for-purpose, and documentation aligned with your downstream use.

Biomolecule Carrier
Antibody · Peptide · Protein · Oligo · Polymer
Linker & Conjugation
NHS · Maleimide · Click · Enzymatic
Payload / Function
Drug · Label · Ligand · Sensor
Therapeutic Applications

ADCs, peptide–drug, protein–drug, and RNAi bioconjugates for oncology, immunology, metabolic disease, and targeted delivery programs.

Imaging & Analytical

Bioconjugates for in vivo imaging, in vitro diagnostics, biosensors, and analytical method development using optical, radiometric, or electrochemical readouts.

Documentation & Scale

Method summaries, CoAs, and optional tech transfer packages to support discovery, preclinical, kit/OEM, and platform evaluation projects.

How We Approach Application-Based Bioconjugates
  • Begin with the biology: gene, receptor, cell type, or tissue of interest.
  • Clarify the readout: therapeutic effect, imaging, functional assay, or sensor.
  • Select the carrier: antibody, peptide, protein, or nucleic acid platform.
  • Engineer the linker: cleavable vs non-cleavable, spacer, and conjugation sites.
  • Choose payloads/labels: drugs, labels, ligands, or functional groups.
  • Optimize conditions: DAR/loading, aggregation, and stability.
  • Align analytics: LC-MS, HPLC/UPLC, SEC, activity/binding assays.
  • Deliver documentation: reports, specifications, and recommended next steps.

Application-based bioconjugate projects can be combined with drug conjugation services and broader bioconjugation offerings from Bio-Synthesis.

RNAi Delivery Bioconjugates for Targeted Gene Silencing

RNA interference (RNAi) bioconjugates couple siRNA, miRNA, and antisense oligonucleotides (ASOs) with ligands, peptides, antibodies, or polymers to deliver sequences to defined tissues and cell types. These constructs support gene silencing in metabolic disease, oncology, cardiovascular, and rare disease programs.

Peptide siRNA Conjugates
siRNA-Peptide interaction with cancer cell.
RNAi Payload
siRNA · ASO · miRNA
Linker Chemistry
Cleavable · Click · Spacer/PEG
Targeting Ligand
GalNAc · Peptide · Antibody · Polymer
Product Highlights
  • GalNAc–siRNA and GalNAc–ASO conjugates for liver-directed gene silencing.
  • Peptide–RNAi constructs, including CPPs and tissue-targeting ligands.
  • Antibody–RNAi conjugates (ARCs) for cell-type selective knockdown.
  • Polymer–RNAi designs with pH- or redox-responsive linkers for endosomal escape.
Preferred Applications
  • Metabolic and cardiovascular disease programs (e.g., ApoC3, PCSK9, TTR).
  • Oncology targets (KRAS, MYC, VEGF, BCL2 family, and related pathways).
  • CNS and neuromuscular targets using BBB-crossing or muscle-homing ligands.
  • Tool compounds for mechanistic work and in vivo target validation.
Technical Notes — Nucleic Acid Tools & Delivery
RNA Chemistry
  • Choose 5′ or 3′ attachment sites that preserve RNAi activity and RISC loading.
  • Use 2′-OMe, 2′-F, and phosphorothioate patterns to balance potency and stability.
  • Consider charge-shielding and hydrophilic spacers to improve uptake and solubility.
Targeting & Release
  • Use cleavable linkers for intracellular release in endosomes or cytosol.
  • Optimize ligand valency (e.g., tri-GalNAc) to receptor density and internalization.
  • Profile uptake, trafficking, and silencing in relevant cell lines and in vivo models.
Aptamer–Taxol nucleic acid tool conjugate schematic
RNA interference (RNAi) mechanism showing siRNA loading into RISC and sequence-specific mRNA cleavage.

Nucleic Acid Tools & Delivery Bioconjugates

Nucleic-acid bioconjugates extend beyond RNAi therapeutics to include DNA/RNA labels, aptamer-drug constructs, proximity assays, delivery-enhancing conjugates, and nucleic-acid–guided targeting systems. These tools support imaging, gene-expression analysis, targeted delivery, and next-generation diagnostic platforms.

ASO Peptides, siRNA Lipid ConjugatesConjugates
Nucleic acid tools and delivery bioconjugates.
Nucleic Acid Carrier
DNA · RNA · Aptamer · ASO
Conjugation Chemistry
Click · Amide · PEG · Cleavable
Payload / Modifier
Drug · Label · Ligand · Polymer
Use Cases
  • Aptamer–drug conjugates (ApDCs) for receptor-targeted delivery.
  • DNA/RNA fluorophore and chelator labels for imaging and tracking.
  • Nucleic-acid proximity probes for binding and interaction assays.
  • Polymer- or peptide-modified oligos for enhanced uptake.
Delivery & Targeting Tools
  • Lipid, peptide, and polymer conjugates for endosomal escape.
  • Ligand-conjugated oligos for receptor-mediated delivery.
  • Custom surface attachment chemistries for assays and biosensors.
  • Aptamer-guided targeting for oncology, inflammation, and diagnostics.
Technical Notes — Nucleic Acid Tools & Delivery
Nucleic Acid Structure
  • Preserve secondary structure in aptamers and structured RNAs.
  • Choose 5′ or 3′ conjugation sites that minimize functional disruption.
  • Use hydrophilic spacers to offset hydrophobic payloads.
Delivery Enhancements
  • Incorporate CPPs, lipids, or polymer linkers for improved uptake.
  • Use cleavable linkers for intracellular release of drugs or reporters.
  • Optimize charge balancing to reduce aggregation and improve trafficking.
Aptamer–Taxol nucleic acid tool conjugate schematic
Example: Aptamer–Taxol bioconjugation demonstrating drug-linker attachment at the 5′ position.

ADC Bioconjugates & Drug-Targeted Therapeutic Applications

Antibody–Drug Conjugates (ADCs) and related drug-targeted bioconjugates use antibodies, peptides, or proteins to deliver potent payloads to specific cells. Application-based ADC work focuses on target biology, payload class, linker, and DAR to balance efficacy and safety for oncology and immune-modulation programs.

ASO Peptides, siRNA Lipid ConjugatesConjugates
ADC bioconjugates and drug-targeted therapeutic applications.
Targeting Carrier
mAb · Fab · scFv · Peptide · Protein
Linker Chemistry
Cleavable · Non-cleavable · Click
Drug Payload
Cytotoxic · Inhibitor · Immune Modulator
Application Focus
  • Exploratory ADC panels for target and epitope evaluation.
  • Linker and DAR series for preclinical SAR work.
  • ADC-like antibody–label conjugates for biodistribution and imaging.
  • Drug-targeted constructs beyond antibodies (e.g., peptide–drug, protein–drug).
Payload & Linker Choices
  • Anthracycline, taxane, alkylator, and topoisomerase-based oncology payloads.
  • Immune modulators and targeted inhibitors for pathway-specific modulation.
  • Val–Cit, disulfide, acid-labile, and stable linkers depending on desired release profile.
  • Hydrophilic linkers and spacers to manage aggregation and PK.
Technical Notes — ADC & Drug-Targeted Constructs
Conjugation Strategy
  • Align carrier format (IgG, Fab, peptide) with accessible lysine/cysteine sites.
  • Use partial reduction or engineered sites to gain control over DAR.
  • Optimize buffer systems and reduction conditions to limit aggregation.
  • Confirm DAR, species distribution, and aggregation by LC-MS/SEC.
Function & Readouts
  • Maintain affinity and specificity while increasing potency.
  • Correlate in vitro binding and killing with in vivo exposure and response.
  • Use imaging-conjugates as a lower-risk proxy for ADC biodistribution.
LC-MS analysis of an antibody–drug conjugate bioconjugate
LC-MS analysis of an Antibody–Drug Conjugate (ADC) demonstrating the molecular weight shift and DAR distribution relative to the unconjugated antibody.

Imaging Bioconjugates & Molecular Diagnostic Applications

Imaging bioconjugates attach fluorophores, chelators, or radiolabels to targeting carriers such as antibodies, peptides, proteins, or oligonucleotides. These constructs support optical, PET/SPECT, or hybrid imaging as well as in vitro diagnostics, companion diagnostics, and biodistribution studies.

DNA Chelator, oligo Fluorophore labeling, Molecular Diagnostic Applications
Imaging bioconjugates and diagnostic applications.
Targeting Carrier
Antibody · Peptide · Oligo · Protein
Linker & Spacer
Amide · Click · PEG
Imaging Label
Fluorophore · Chelator · Biotin
Use Cases
  • In vivo tumor and tissue imaging with NIR fluorophores or radiolabels.
  • In vitro IHC/IF reagents with defined drug-to-label ratio and stability.
  • Companion diagnostic tools paired with therapeutic agents.
  • Biodistribution and PK/PD studies using labeled ADCs or RNAi constructs.
Labels & Detection
  • Visible and NIR fluorophores for microscopy and whole-animal imaging.
  • Metal chelators and radiometal complexes for PET/SPECT and MS imaging.
  • Biotin, digoxigenin, and other affinity tags for sandwich and capture assays.
Technical Notes — Imaging Bioconjugates
Label Positioning
  • Place labels away from antigen-binding or catalytic sites where possible.
  • Use PEG or flexible linkers to reduce quenching and steric hindrance.
  • Control degree of labeling (DOL) for consistent brightness and performance.
Assay & Imaging Readouts
  • Match label properties to excitation/emission or imaging modality.
  • Evaluate background, signal-to-noise, and dynamic range.
  • Ensure stability under storage and assay conditions.

Biosensor & Analytical Assay Bioconjugates

Biosensor and assay bioconjugates immobilize or label biological recognition elements for electrochemical, optical, and affinity-based detection. These constructs are core to diagnostic kits, OEM reagents, and analytical method development.

antibody conjguates, aptamer conjugats, enzyme conjugates, gold conjugates
Biosensor and analytical assay bioconjugates.
Recognition Element
Antibody · Aptamer · Enzyme
Surface / Linker
Thiol–Gold · EDC/NHS · Click
Reporter / Function
Enzyme · Tag · Label
Sensor & Assay Applications
  • Antibody and aptamer immobilization for SPR, QCM, and electrochemical sensors.
  • Enzyme-label conjugates for ELISA, CLIA, and colorimetric assays.
  • Nucleic acid probes and capture strands for PCR and hybridization assays.
OEM & Kit Support
  • Lot-to-lot controlled conjugates for diagnostics and OEM partners.
  • Stability and performance studies under assay-specific conditions.
  • Method summaries and documentation aligned with kit manufacturing needs.
Technical Notes — Biosensors & Assays
Surface & Orientation
  • Use oriented immobilization where possible for improved binding capacity.
  • Control surface density to avoid crowding and steric hindrance.
  • Verify activity after conjugation and immobilization steps.
Assay Performance
  • Optimize buffer, pH, and blocking agents to reduce nonspecific binding.
  • Evaluate sensitivity, LoD, LoQ, and linear range.
  • Monitor performance over shelf life and under shipping conditions.

Protein & Enzyme Engineering Bioconjugates

Protein and enzyme bioconjugates tune stability, pharmacokinetics, and function through PEGylation, polymer attachment, site-specific labeling, and prodrug strategies. These tools support industrial biocatalysis, therapeutic protein optimization, and mechanistic studies.

pegylation, protein labeling, protein enzyme conjugation
Bioconjugate technologies in protein engineering.
Protein / Enzyme
Cytokine · Enzyme · Nanobody
Conjugation Handle
NHS · Maleimide · Tag/Click
Modifier / Label
PEG · Polymer · Reporter · Drug
Applications
  • PEGylated enzymes and cytokines with extended half-life.
  • Enzyme–drug conjugates for local prodrug activation.
  • Site-specific reporter labeling for activity and localization studies.
Engineering Strategy
  • Identify permissive sites away from active or binding regions.
  • Introduce defined handles via mutagenesis or tags when needed.
  • Assess activity and stability before and after conjugation.
Technical Notes — Protein & Enzyme Conjugates
Structure & Function
  • Maintain tertiary structure by controlling pH, solvent, and temperature.
  • Preserve active-site geometry and key binding epitopes.
  • Monitor aggregation and heterogeneity post-conjugation.
Analytics & Specs
  • Use LC-MS, SDS-PAGE, and SEC to confirm integrity.
  • Define acceptable ranges for activity, purity, and aggregation.
  • Document conjugation scheme and potential critical process parameters.

Smart & Stimuli-Responsive Bioconjugate Systems

Smart bioconjugates incorporate pH-sensitive, enzyme-cleavable, redox-responsive, photo-triggered, or thermo-responsive linkers that activate or release payloads only under specific biological conditions. These architectures are used for precision drug delivery, controlled imaging activation, and environment-dependent functional switching.

thermo-responsive conjugates, pH-responsive conjugates, control drug release
Bioconjugate systems for controlled durg release.
Carrier
Antibody · Peptide · Oligo · Polymer
Smart Linker
pH · Enzyme · Redox · Photo
Payload / Function
Drug · Probe · Reporter
Stimuli Types
  • pH-sensitive linkers that release payloads in acidic tumor microenvironments.
  • Enzyme-cleavable peptides responsive to MMPs, cathepsins, caspases, etc.
  • Redox-responsive disulfide linkers cleaved in high-glutathione environments.
  • Photo-cleavable or photo-switchable linkers for spatiotemporal control.
Applications
  • Intracellular drug release triggered by endosomal/lysosomal environments.
  • Activatable imaging probes with “turn-on” fluorescence or radiolabel behavior.
  • Smart prodrugs that activate only in diseased tissues.
  • Conditional biosensor systems responding to local biochemical signals.
Technical Notes — Smart & Stimuli-Responsive Systems
Mechanistic Tuning
  • Select trigger sensitivity based on biological environment (tumor pH, GSH levels, enzyme abundance).
  • Use degradable or reversible linkers to control release kinetics.
  • Ensure linker stability during storage and circulation.
Design Considerations
  • Balance stability vs reactivity to avoid premature release.
  • Match payload properties to linker-trigger mechanisms.
  • Validate activation profiles using in vitro/in vivo trigger models.
LC-MS analysis of an antibody–drug conjugate bioconjugate
Example: Smart linker design enabling selective release in acidic, enzymatic, or reducing environments.

Technical Summary — Application-Based Bioconjugation Platform

Workflow
  • Project intake (application, biology, carrier, payload, and risks).
  • Carrier, linker, and conjugation route selection.
  • Conjugation with in-process monitoring of loading and aggregation.
  • Purification tailored to conjugate and application type.
  • QC and documentation aligned with discovery, preclinical, or OEM needs.
Controls & Comparators
  • Unconjugated carriers and payloads as baseline controls.
  • Linker and loading variants for ADC, RNAi, and imaging SAR.
  • Cleavable vs non-cleavable linkers for release studies.
  • Functional benchmarks (potency, imaging, sensor response, PK).
Analytics & Documentation
  • Identity and purity by LC-MS and HPLC/UPLC.
  • Aggregation and size variants by SEC-HPLC.
  • Loading (DAR, DOL, ligand density) by MS and UV/Vis methods.
  • Certificates of Analysis and optional tech transfer packages.

FAQ

Which types of applications do you support for bioconjugates?

We support therapeutic, imaging, biosensor, assay, regenerative, and research-tool applications spanning RNAi, ADCs, peptide- and protein-based conjugates, and nucleic-acid tools. During scoping, we align the bioconjugate design to your specific application and readout.

Can you work with both our carriers and your own?

Yes. We can often source or synthesize certain carriers and payloads, or work with proprietary antibodies, peptides, proteins, nucleic acids, and small molecules supplied by your team. Material responsibilities are clarified during the project intake process.

Do you support OEM or diagnostic kit reagent projects?

Yes. We routinely support OEM and kit projects that require enhanced documentation, stability data, and lot-to-lot statistics for assay and diagnostic applications.

What information do you need to scope an application-based project?

We typically ask for the biological target, desired application (e.g., RNAi, ADC, imaging, sensor), carrier type, payload or label, preferred conjugation type, and key performance metrics (potency, sensitivity, imaging contrast, PK, etc.) that you plan to evaluate.

CONTACT

Speak to an Application-Based Bioconjugation Scientist

Share your application (RNAi, ADC, imaging, biosensor, regenerative, or other), carrier type, payload or label, and desired readouts. Our scientists will evaluate feasibility, recommend a conjugation route, and prepare a project quote.

Request a Quote Application-Based Project Platform Evaluation OEM / Kit Partner
Phone: +1-972-420-8505
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Recommended Reading & Bio-Synthesis Resources

  • Chari, R. “Antibody–Drug Conjugates: An Emerging Concept in Targeted Cancer Therapy.” Cancer Research.
  • Srinivasarao, M. & Low, P. “Ligand-Targeted Drug Delivery.” Chemical Reviews.
  • Bargh, J. “Linker Design Considerations for ADCs.” MedChemComm.
  • Beck, A. “Strategies and Challenges for Next-Generation ADCs.” Nature Reviews Drug Discovery.
  • Williford, J. “Oligonucleotide & RNAi Conjugates for Precision Drug Delivery.” Accounts of Chemical Research.
  • Krall, N. “Protein–Drug Conjugates for Targeted Therapeutics.” Angewandte Chemie.

Why Choose Bio-Synthesis

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