DNA Ubermer Long DNA Synthesis up to 400 nt

Custom long DNA synthesis for advanced molecular biology, CRISPR, and synthetic biology workflows, with sequence lengths beyond standard 200-base oligos.

Overview

Long DNA synthesis enables access to extended single-stranded DNA constructs for applications such as genome engineering, synthetic biology, and advanced molecular workflows [1], [2].

Bio-Synthesis offers DNA Ubermer long DNA synthesis up to 400 nt with typical quantities ranging from µg to several mg, depending on oligo length, sequence composition, and synthesis strategy. This service supports research programs that need extended ssDNA or dsDNA with flexible sequence design, optional modifications, purification, and analytical review.

Our long DNA workflow is designed to support demanding constructs with attention to sequence complexity, manufacturability, and fit-for-purpose QC.

Long DNA synthesis visualization showing double helix structure and laboratory workflow

Long DNA synthesis concept. Extended DNA constructs produced for applications including genome engineering, CRISPR workflows, and synthetic biology design.

Service Highlights

400 nt

Maximum length

ssDNA / dsDNA

Single & double strand from µg to mgs

Custom

Sequence-by-sequence design

Flexible

Modification options

QC

Purification and analysis

Length

Built for extended constructs

Support DNA designs that exceed conventional oligonucleotide ranges.

Customization

Configured around your project

Tailor sequence, modification, and purification to your workflow.

Application

Application-driven design

Suitable for molecular biology, CRISPR, and synthetic biology programs.

Service Capabilities

DNA Custom

Custom long DNA sequence submission

Submit single long DNA targets or broader design panels for research-driven development workflows.

Modified Flexible

Selectable modification options

Long DNA constructs can be designed with project-aligned modification strategies subject to sequence feasibility.

QC Purification

Analytical and purification support

Purification and analytical review can be matched to sequence complexity and downstream application requirements.

What we support

DNA Ubermer long DNA synthesis up to 400 nt • project-specific design review • selected modification support • application-aligned purification • analytical characterization • technical consultation during quoting and planning.

Service Specifications for Long DNA Synthesis

DNA Ubermer supports extended-length DNA constructs beyond standard oligonucleotide ranges. Final specifications depend on sequence design, complexity, and project requirements.

Category Specification
Product Type Custom long DNA (DNA Ubermer) with ssDNA and dsDNA formats available
Length Up to 400 nt
Quantity From µg to multi-mg, depending on oligo length, sequence design, and synthesis strategy
Format Extended ssDNA and dsDNA constructs for research applications
Sequence Design Custom sequence submission with project-specific feasibility review
Modification Options Selected DNA modifications and labeling options subject to design compatibility
Purification Options Application-dependent purification workflows
Quality Control Analytical review based on product type and project needs
Applications CRISPR donor templates, mutagenesis, and synthetic biology applications [3]

Key differentiation

DNA Ubermer is positioned for projects that need longer DNA sequence length than conventional long oligonucleotide products, supporting up to 400 nt with broad modification compatibility for advanced research workflows.

DNA Ubermer Modification Options

DNA Ubermer supports a broad set of long-DNA modification options commonly requested for cloning, donor design, control templates, labeling, and specialized assay development workflows.

5′ Modifications

5′ end functionalization

Available options can include 5′ phosphorylation, 5′ biotin, 5′ amino modifiers, 5′ deoxyInosine, 5′ deoxyUridine, and related project-specific formats.

Internal Bases

Internal base modifications

Internal deoxyInosine, deoxyUridine, 5-methyl dC, and other sequence-specific base modifications can be incorporated based on design compatibility.

Backbone

Backbone modifications

Phosphorothioate linkages and other backbone-oriented changes can be used to support stability and specialized functional requirements.

RNA / Hybrid

RNA base integration

2′-O-methyl RNA bases and selected ribo-base options may be incorporated when hybrid DNA/RNA design is needed for a specific application.

3′ End

3′ end modifications

3′ amino modifiers, 3′ phosphorylation, 3′ spacers, and other terminal modifications can be aligned with downstream assay or construct design needs.

Spacers

Spacers and structural elements

Spacer 18 and related structural elements can be used to tune construct architecture, reduce steric effects, or support custom molecular formats.

Modification compatibility

DNA Ubermer is intended to support the standard long-DNA modification categories commonly requested in the market, while extending sequence length beyond typical long-DNA oligo offerings. Final compatibility depends on sequence composition, modification placement, and synthesis feasibility.

Methods for Long DNA Synthesis

Long DNA constructs can be prepared using different synthesis strategies depending on sequence length, design complexity, modification requirements, and downstream application.

Direct

Direct chemical synthesis

Enables the production of sequence-defined long DNA oligonucleotides through solid-phase chemical synthesis, supporting controlled design, selected modifications, and flexible research use.

Ligation

Ligation-based assembly chemistry

Longer DNA constructs can also be generated using ligation chemistry, where smaller sequence segments are assembled into a larger product to address challenging designs or extended length requirements.

Selection

Method selection by project need

The optimal synthesis path depends on target length, sequence composition, requested format, modification placement, and intended application. Our team can recommend the most suitable approach during project review.

How the approach is chosen

Direct chemical synthesis is typically preferred for well-defined long DNA constructs with controlled sequence requirements, while ligation-based strategies may be used when construct design, length, or assembly considerations make a segmented approach more appropriate.

Applications

Common long DNA application areas

  • CRISPR HDR donor template development
  • Long primers and mutagenesis templates
  • Synthetic biology construct design
  • Assembly fragments and cloning support
  • Diagnostic and assay reagent development
  • Reference standards and control materials

Why researchers use DNA Ubermer

  • Access longer custom DNA constructs with defined sequence composition
  • Support design strategies that exceed standard oligo length limits
  • Align purification and QC with downstream workflow requirements
  • Reduce friction between concept design and experimental execution

Project support model

Our team can review target length, sequence complexity, modification requirements, purification preferences, and intended research application to recommend an appropriate long DNA synthesis approach.

FAQ

What is DNA Ubermer?

DNA Ubermer is Bio-Synthesis long DNA synthesis for custom ssDNA constructs up to 400 nt for research use.

What DNA lengths are supported?

DNA Ubermer supports custom long DNA constructs up to 400 nt, depending on sequence design and project requirements.

Can modified long DNA be requested?

Yes. Selected modification and labeling options can be discussed during project review and are assessed based on sequence feasibility and intended use.

What information should I provide for a quote?

Please provide the DNA sequence, target length, scale, modification requirements, purification preferences, and intended application.

Talk to a Scientist

Share your target sequence length, modification needs, purification requirements, and intended application. Our team will help align your design with the most suitable synthesis strategy and workflow.

Sequence review Modification strategy Purification planning Scale optimization Application support

Direct contact

Email: sales@biosyn.com
Phone: +1-800-227-0627
Direct: +1-972-420-8505

What to include

  • Sequence and length
  • Requested scale
  • Desired modification(s)
  • Purification preference
  • Intended application
  • Target timeline
Fast response Technical consultation Confidential

Rapid feasibility review • Project-based support • Research-focused solutions

Recommended Reading & Literature References

Selected references related to long DNA oligonucleotide synthesis, genome engineering, synthetic biology, and advanced molecular applications.

  1. Kosuri, S.; Church, G. M. Large-scale de novo DNA synthesis: technologies and applications. Nat. Methods 2014, 11, 499–507. DOI
  2. Hughes, R. A.; Ellington, A. D. Synthetic DNA synthesis and assembly: putting the synthetic in synthetic biology. Cold Spring Harb Perspect Biol 2017, 9, a023812. DOI
  3. Richardson, C. D.; Ray, G. J.; DeWitt, M. A.; Curie, G. L.; Corn, J. E. Enhancing homology-directed genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA. Nat. Biotechnol. 2016, 34, 339–344. DOI
  4. Beaucage, S. L.; Caruthers, M. H. Deoxynucleoside phosphoramidites—A new class of key intermediates for deoxypolynucleotide synthesis. Tetrahedron Lett. 1981, 22, 1859–1862. DOI
  5. Kosuri, S.; et al. Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips. Nat. Biotechnol. 2010, 28, 1295–1299. DOI
  6. Chandrasegaran, S.; Carroll, D. Origins of programmable nucleases for genome engineering. J. Mol. Biol. 2016, 428, 963–989. DOI
Note: These references are provided for scientific context on long DNA synthesis, genome editing, and synthetic biology applications and gene assembly workflows [2], [5]. They are not intended to represent clinical claims.

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